Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019711

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019711
Fusion NameHBV-chr4 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDTCGA-G3-A3CH
Sample NameTCGA-G3-A3CH-11A
Sample TypeNontumor
Age53
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandp14
Human Strand
Human Integration Location Type-
Hg19 Start39044912
Hg19 End39044912
Hg38 Start39043292
Hg38 End39043292
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneKLHL5
Distance1747
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11469
Virus Breakpoint21702
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGG
ViMIC ID-