Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019767

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019767
Fusion NameHBV-MEIS1 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDTCGA-DD-A11A
Sample NameTCGA-DD-A11A-01A
Sample TypeTumor
Age67
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandp14
Human Strand
Human Integration Location TypeIntron7
Hg19 Start66724603
Hg19 End66724603
Hg38 Start66497471
Hg38 End66497471
Junction Sequence-
Target Gene
Target GeneMEIS1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11814
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
ViMIC ID-