Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019785

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019785
Fusion NameHBV-VKORC1L1 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDRK012
Sample NameRK012
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29212479
JournalBMC Medicine
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37.55
Human Genome RefSeq AccessionGCF_000001405.22
Human Chromosomechr7
Cytogenetic Bandq11.21
Human Strand
Human Integration Location TypeIntron1
Hg19 Start65415637
Hg19 End65415653
Hg38 Start65950650
Hg38 End65950666
Junction Sequencetacaaatagataatgg
Target Gene
Target GeneVKORC1L1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11823
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
ViMIC ID-