Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019850

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019850
Fusion NameHBV-DPP6 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDRK130
Sample NameRK130
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29212479
JournalBMC Medicine
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37.55
Human Genome RefSeq AccessionGCF_000001405.22
Human Chromosomechr7
Cytogenetic Bandq36.2
Human Strand
Human Integration Location TypeIntron16
Hg19 Start154599024
Hg19 End154599024
Hg38 Start154807314
Hg38 End154807314
Junction Sequence-
Target Gene
Target GeneDPP6
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11812
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGC| |ACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCG
ViMIC ID-