Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019925

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019925
Fusion NameHBV-KMT2B integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDRK159
Sample NameRK159_C01
Sample TypeTumor
Age65
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID27064257
JournalNature GeNetics
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.12
Human Strand
Human Integration Location TypeExon6
Hg19 Start36213926
Hg19 End36213940
Hg38 Start35723024
Hg38 End35723038
Junction SequenceTCCCGTCACGGTCC
Target Gene
Target GeneKMT2B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11640
Virus Breakpoint21740
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAG
ViMIC ID-
Predicted VIS Effect
Gene IdENSG00000272333.8
Gene NameKMT2B
TranscriptTranscript 1: ENST00000673918.2, Transcript 2: ENST00000420124.4, Transcript 3: ENST00000692961.1, Transcript 4: ENST00000689139.1, Transcript 5: ENST00000691855.1, Transcript 6: ENST00000674114.2, Transcript 7: ENST00000685062.1, Transcript 8: ENST00000689864.1, Transcript 9: ENST00000690487.1, Transcript 10: ENST00000693540.1, Transcript 11: ENST00000685609.1, Transcript 12: ENST00000691968.1
Transcript 1 RegionCDS
Transcript 1 Impactstop_gained
Transcript 1 FrameshiftTrue
Transcript 1 Stop GainedTrue
Transcript 1 Protein Change From Aa0159
Transcript 2 RegionCDS
Transcript 2 Impactstop_gained
Transcript 2 FrameshiftTrue
Transcript 2 Stop GainedTrue
Transcript 2 Protein Change From Aa0155
Transcript 3 RegionCDS
Transcript 3 Impactstop_gained
Transcript 3 FrameshiftTrue
Transcript 3 Stop GainedTrue
Transcript 3 Protein Change From Aa0155
Transcript 4 RegionCDS
Transcript 4 Impactstop_gained
Transcript 4 FrameshiftTrue
Transcript 4 Stop GainedTrue
Transcript 4 Protein Change From Aa0755
Transcript 5 RegionCDS
Transcript 5 Impactstop_gained
Transcript 5 FrameshiftTrue
Transcript 5 Stop GainedTrue
Transcript 5 Protein Change From Aa0746
Transcript 6 RegionCDS
Transcript 6 Impactstop_gained
Transcript 6 FrameshiftTrue
Transcript 6 Stop GainedTrue
Transcript 6 Protein Change From Aa095
Transcript 7 Regionpromoter
Transcript 7 Impactpromoter_insertion
Transcript 8 Regionpromoter
Transcript 8 Impactpromoter_insertion
Transcript 9 Regionpromoter
Transcript 9 Impactpromoter_insertion
Transcript 10 Regionpromoter
Transcript 10 Impactpromoter_insertion
Transcript 11 Regionpromoter
Transcript 11 Impactpromoter_insertion
Transcript 12 Regionpromoter
Transcript 12 Impactpromoter_insertion
SpliceAI Score
Delta ScoresAcceptor Gain: 0.020 | Acceptor Loss: 0.020 | Donor Gain: 0.010 | Donor Loss: 0.020
Delta Score Max0.020
Delta Position at Max129
Delta Score FlagLOW
GeneKMT2B
Altered Protein (FASTA)
AlphaGenome Analysis
Chromosomechr19