Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019976

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019976
Fusion NameHBV-chr12:q12 integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample IDTCGA-DD-A1EH
Sample NameTCGA-DD-A1EH-11A-11R-A131-07
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID24085110
JournalNATURE COMMUNICATIONS
Published Year2013
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq12
Human Strand
Human Integration Location TypeIntergenic
Hg19 Start38697937
Hg19 End38698162
Hg38 Start38304135
Hg38 End38304360
Junction Sequenceaaatacaaaaattagccaggcatggtggcacaggcctgtagtcccagctactcgagaggccgaggcaaaagaattgcttaaacccagaaggcagaagttgcagtgagccgagatggagccattgcactccagcctgggcaacaaagcgagactccatctcaaaaaaaaattaattaattaatttaattaaagtctctgttcaactaccctagtcgcatgtggctg
Target Gene
Target Gene-
Nearby GeneENSG00000301992
Distance2281
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus, complete genome
Virus Genome Length3215
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-