Basic Information ▼ | |
VISDB ID | TVIS10019976 |
---|---|
Fusion Name | HBV-chr12:q12 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | de novo assembly of RNA-seq reads |
Wet Assay | No |
Sample ID | TCGA-DD-A1EH |
Sample Name | TCGA-DD-A1EH-11A-11R-A131-07 |
Sample Type | Nontumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 24085110 |
Journal | NATURE COMMUNICATIONS |
Published Year | 2013 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr12 |
Cytogenetic Band | q12 |
Human Strand | |
Human Integration Location Type | Intergenic |
Hg19 Start | 38697937 |
Hg19 End | 38698162 |
Hg38 Start | 38304135 |
Hg38 End | 38304360 |
Junction Sequence | aaatacaaaaattagccaggcatggtggcacaggcctgtagtcccagctactcgagaggccgaggcaaaagaattgcttaaacccagaaggcagaagttgcagtgagccgagatggagccattgcactccagcctgggcaacaaagcgagactccatctcaaaaaaaaattaattaattaatttaattaaagtctctgttcaactaccctagtcgcatgtggctg |
Target Gene ▼ | |
Target Gene | - |
Nearby Gene | ENSG00000301992 |
Distance | 2281 |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977.1 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus, complete genome |
Virus Genome Length | 3215 |
Virus Breakpoint1 | - |
Virus Breakpoint2 | - |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | - |
ViMIC ID | - |