Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10020102

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10020102
Fusion NameHBV-KMT2B integration
ValidatedYes
Curated WayVISDB1.0
MethodReal-time PC
Wet AssayYes
Sample IDHCC131
Sample NameHCC131
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID18320596
JournalHuman mutation
Published Year2008
Human Genome
Human Genome Version DescriptionAD000671.1
Human Genome RefSeq AccessionAD000671.1
Human Chromosomechr19
Cytogenetic Bandq13.1
Human Strand
Human Integration Location TypeIntron3
Hg19 Start-
Hg19 End-
Hg38 Start-
Hg38 End-
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB033550.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus DNA, complete genome
Virus Genome Length3215
Virus Breakpoint11827
Virus Breakpoint21826
Virus Gene Name-
Virus Region TypeHBx
Integrated Virus SequenceAC
ViMIC ID-