Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10020199

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10020199
Fusion NameHBV-CDK15 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusScan
Wet AssayNo
Sample IDTCGA-CC-A3MB
Sample NameTCGA-CC-A3MB-01A-11R-A213-07
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID27339696
JournalScientific Reports
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq33.1
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start202708691
Hg19 End202709739
Hg38 Start201843968
Hg38 End201845016
Junction SequenceAAAAGGCAACAAGCTTCTTCCAGGCAATGGAAGGCTTTTTGGGGGAGAAAAGAAAGTGAATTACAGGTTTAAACCTAGGAATGTCATTTTTTGAAACTTGTTTAAAATATTTTCAATCCTTctagtggtttgtgagctcctggggtttctggaaggtgtttgggaactggatagagggttagttcatgcctttaaaagccaatacatttccatttctcttttataaccaagtaataacccaattatgcatgtatt
Target Gene
Target GeneCDK15
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus, complete genome
Virus Genome Length3215
Virus Breakpoint11068
Virus Breakpoint22164
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTGTATACAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTT
ViMIC ID-