Basic Information ▼ | |
VISDB ID | TVIS10020250 |
---|---|
Fusion Name | HBV-chr22 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Bioinformatic analysis using VirusScan |
Wet Assay | No |
Sample ID | TCGA-CC-A9FU |
Sample Name | TCGA-CC-A9FU-01A-11R-A37K-07 |
Sample Type | Tumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 27339696 |
Journal | Scientific Reports |
Published Year | 2016 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr22 |
Cytogenetic Band | q11.21 |
Human Strand | + |
Human Integration Location Type | - |
Hg19 Start | 20468503 |
Hg19 End | 20469551 |
Hg38 Start | 18618636 |
Hg38 End | 18619684 |
Junction Sequence | TGTCCCAGCATGGGCTCACCAAGCTCCTACCCTCTCCCGGTCCAGCTTTCTCACCTATGAAATAAAAGTGAAgctggacatggtggcccacgcctctaatctcagcagtttgggaggccaaggtgggtggatcacttgagatcaggagattgagaccagcctggctaacatggtgaaaccccatctctactaaaaaacacaaaaattagccgggcgtggtggcagttgcctgtaatcccagctactcgggaggct |
Target Gene ▼ | |
Target Gene | - |
Nearby Gene | Metazoa_SRP |
Distance | 2737 |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977.1 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus, complete genome |
Virus Genome Length | 3215 |
Virus Breakpoint1 | 808 |
Virus Breakpoint2 | 1904 |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | TTCTTTTGTCTTTGGGTATACATTTGAACCCTAATAAAACCAAACGTTGGGGCTACTCCCTTAACTTCATGGGATATGTAATTGGAAGTTGGGGTACTTTACCGCAGGAACATATTGTACAAAAACTCAAGCAATGTTTTCGAAAATTGCCTGTAAATAGACCTATTGATTGGAAAGTATGTCAAAGAATTGTGGGTCTTTTGGGCTTTGCTGCCCCTTTTACACAATGTGGCTATCCTGCCTTGATGCCTTTAT |
ViMIC ID | - |