Basic Information ▼ | |
VISDB ID | TVIS10020261 |
---|---|
Fusion Name | HBV-ADRA1A integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Bioinformatic analysis using VirusScan |
Wet Assay | No |
Sample ID | TCGA-DD-A116 |
Sample Name | TCGA-DD-A116-11A-12R-A26B-07 |
Sample Type | Tumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 27339696 |
Journal | Scientific Reports |
Published Year | 2016 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr8 |
Cytogenetic Band | p21.2 |
Human Strand | + |
Human Integration Location Type | Intronic |
Hg19 Start | 26696986 |
Hg19 End | 26698034 |
Hg38 Start | 26839469 |
Hg38 End | 26840517 |
Junction Sequence | TTGACTTCCTAAACTTCAAACTGGAAAACCAGCCTCCTCTGACTGTACCTGTACAATGATTTTGGTCCTTTATTGGGCTTAATTACATGCTAGTCTCCACCTTGAAGTCAGGGTCTGTTCCTGTCTGGCGCCTGGTAGACTCTCAATGTTTCTTGAATAAAGTAAATAAAAGATATTTTGAGATCTTAGTCCACTCTGGGGTGGCTTCCCAGAAGAGAAAAGCTGGGATTTATTTTAAGAAATGGAAGTAATTTG |
Target Gene ▼ | |
Target Gene | ADRA1A |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977.1 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus, complete genome |
Virus Genome Length | 3215 |
Virus Breakpoint1 | 2128 |
Virus Breakpoint2 | 3176 |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | GAAGACCCAGCATCCAGGGAATTAGTAGTCAGCTATGTCAATGTTAATATGGGCCTAAAAATTAGACAACTATTGTGGTTTCACATTTCCTGCCTTACTTTTGGAAGAGAAACTGTCCTTGAGTATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCCGCTTACAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCC |
ViMIC ID | - |