Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10020350

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10020350
Fusion NameHBV-RANBP17 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusScan
Wet AssayNo
Sample IDTCGA-DD-A116
Sample NameTCGA-DD-A116-11A-12R-A26B-07
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID27339696
JournalScientific Reports
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq35.1
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start170508210
Hg19 End170509258
Hg38 Start171081206
Hg38 End171082254
Junction SequenceCTTCGGTAGTGGTATCTCTTATTTTCTTTCTCCTTTTCCCCCTAGTCAGTAAAACTAATATAAGTGATGGCCTTCACATCATTTAATAAGAGGATAAGAGCTACATCATGGTCATTGAATAAAAGAATATGGGTTAAGAACTGCTTCCCAGTATACTCTGCAGATTTGATTTATTATGAATGATTTATGAGATATTAGATTGCTGTATAGTAGTTAGCAGTGTATTCACAATCAGCTGCACTCTAATGCCAAGTG
Target Gene
Target GeneRANBP17
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus, complete genome
Virus Genome Length3215
Virus Breakpoint11185
Virus Breakpoint22281
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCG
ViMIC ID-