| Basic Information ▶ | |
| VISDB ID | TVIS10020462 |
|---|---|
| Fusion Name | HBV-PTPRR integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | Bioinformatic analysis using VirusScan |
| Wet Assay | No |
| Sample ID | TCGA-DD-A1EL |
| Sample Name | TCGA-DD-A1EL-11A-11R-A155-07 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 27339696 |
| Journal | Scientific Reports |
| Published Year | 2016 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr12 |
| Cytogenetic Band | q15 |
| Human Strand | + |
| Human Integration Location Type | Intronic |
| Hg19 Start | 71212933 |
| Hg19 End | 71213981 |
| Hg38 Start | 70819153 |
| Hg38 End | 70820201 |
| Junction Sequence | ctactaaaaatacaaaaattagccaggtgtggtggcgcatgcctgtagtcccagctactccggaggctgaggcatgaggaggtgcaggttgcactgagctgagattgcaccactgcgctccagcctgggtgacagagtgagactctgtctcaaaacaaacaaacaaacaagaaagaataaaGAGCAAAAATAGACATTGGCTCATAGAGGTATGGTCAAATTGTGCATTTATGGGCTTCATATGTTTTGCAAAGT |
| Target Gene ▶ | |
| Target Gene | PTPRR |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_003977.1 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus, complete genome |
| Virus Genome Length | 3215 |
| Virus Breakpoint1 | 1 |
| Virus Breakpoint2 | 906 |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | TCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCG |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D