| Basic Information ▶ | |
| VISDB ID | TVIS10020529 |
|---|---|
| Fusion Name | HBV-SHROOM3 integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | Bioinformatic analysis using VirusScan |
| Wet Assay | No |
| Sample ID | TCGA-G3-A3CH |
| Sample Name | TCGA-G3-A3CH-11A-11R-A22L-07 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 27339696 |
| Journal | Scientific Reports |
| Published Year | 2016 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr4 |
| Cytogenetic Band | q21.1 |
| Human Strand | + |
| Human Integration Location Type | Intronic |
| Hg19 Start | 77467287 |
| Hg19 End | 77468335 |
| Hg38 Start | 76546134 |
| Hg38 End | 76547182 |
| Junction Sequence | TTATAGTAATgcagagcaaacaacattatctatattttatagatgagagacccatccagggtcctgcagataaaagggccagagttgggattagagcacaggattcctgactcctaacccagtttactttcttctactacaatatacCCCATTTACGACCCCAAATAGGAATGTTCAACAGTATAAATGTAATGATTTAGGATGAGATGAGAGGTAGATGGGAAGAACAGGAGGAATCACCTCTGTACCCTGTGG |
| Target Gene ▶ | |
| Target Gene | SHROOM3 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_003977.1 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus, complete genome |
| Virus Genome Length | 3215 |
| Virus Breakpoint1 | 1179 |
| Virus Breakpoint2 | 2275 |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | GTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCG |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D