Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10020601

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10020601
Fusion NameHBV-chr17 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusScan
Wet AssayNo
Sample IDTCGA-G3-AAV0
Sample NameTCGA-G3-AAV0-01A-11R-A37K-07
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID27339696
JournalScientific Reports
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq25.3
Human Strand+
Human Integration Location Type-
Hg19 Start80243098
Hg19 End80244146
Hg38 Start82285222
Hg38 End82286270
Junction SequenceaaaaaaacctaccacatgcaattattgtgggtactaagaaaataatgtctataaaatattataatatactacctggcacataatgaacacttaatacacttattattATCACTAATAATGCTATTGTTATTATTATCACTGCAGGGTTATCAGGAAGGCCTTCCTGGTGCCTAGCC
Target Gene
Target Gene-
Nearby GeneLINC01970
Distance3777
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus, complete genome
Virus Genome Length3215
Virus Breakpoint1104
Virus Breakpoint21200
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCACCCACGTGTCCTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTT
ViMIC ID-