Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10020601

Basic Information ▶
VISDB ID	TVIS10020601
Fusion Name	HBV-chr17 integration
Validated	No
Curated Way	VISDB1.0
Method	Bioinformatic analysis using VirusScan
Wet Assay	No
Sample ID	TCGA-G3-AAV0
Sample Name	TCGA-G3-AAV0-01A-11R-A37K-07
Sample Type	Tumor
Age	-
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	27339696
Journal	Scientific Reports
Published Year	2016
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr17
Cytogenetic Band	q25.3
Human Strand	+
Human Integration Location Type	-
Hg19 Start	80243098
Hg19 End	80244146
Hg38 Start	82285222
Hg38 End	82286270
Junction Sequence	aaaaaaacctaccacatgcaattattgtgggtactaagaaaataatgtctataaaatattataatatactacctggcacataatgaacacttaatacacttattattATCACTAATAATGCTATTGTTATTATTATCACTGCAGGGTTATCAGGAAGGCCTTCCTGGTGCCTAGCC
Target Gene ▶
Target Gene	-
Nearby Gene	LINC01970
Distance	3777
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	-
Virus Genome Accession	NC_003977.1
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus, complete genome
Virus Genome Length	3215
Virus Breakpoint1	104
Virus Breakpoint2	1200
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	CCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAGCACCCACGTGTCCTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTT
ViMIC ID	-