| Basic Information ▶ | |
| VISDB ID | TVIS10020622 |
|---|---|
| Fusion Name | HBV-PCMTD2 integration |
| Validated | Yes |
| Curated Way | ViMIC |
| Method | HBV capture sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | - |
| Sample Type | Cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 31417659 |
| Journal | Journal of Cancer |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr20 |
| Cytogenetic Band | q13.33 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 62935214 |
| Hg19 End | 62935214 |
| Hg38 Start | 64303861 |
| Hg38 End | 64303862 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | PCMTD2, ENSG00000293528 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | HE815465.1 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | HBV genotype D, serotype ayw3, complete genome |
| Virus Genome Length | 3182 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 1100011 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D