Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10020728

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10020728
Fusion NameHBV-chr10:36188616 integration
ValidatedNo
Curated WayViMIC
MethodRNA sequencing
Wet AssayYes
Sample ID-
Sample NamePatient 1
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32592629
JournalJournal of Viral Hepatitis
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandp11.21
Human Strand
Human Integration Location Typeintergenic
Hg19 Start36477544
Hg19 End36477544
Hg38 Start36188616
Hg38 End36188617
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11802
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1400014