Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10021008

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10021008
Fusion NameHBV-chr1:32650914 integration
ValidatedNo
Curated WayViMIC
MethodHBV capture sequencing
Wet AssayYes
Sample ID-
Sample NameFFPE-2629
Sample TypeTumor
Age67
GenderMale
Disease Information
Disease NameNon-Hodgkin lymphoma
Disease AbbreviationNHL
CancerYes
Literature
PubMed ID32350851
JournalInternational journal of cancer
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp35.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start33116515
Hg19 End33116516
Hg38 Start32650914
Hg38 End32650915
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneZBTB8OS
Distance12
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11557
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1400295