Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10021143

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10021143
Fusion NameHBV-chr6:141236668 integration
ValidatedNo
Curated WayViMIC
MethodHBV capture sequencing
Wet AssayYes
Sample ID-
Sample NameFFPE-2629
Sample TypeTumor
Age67
GenderMale
Disease Information
Disease NameNon-Hodgkin lymphoma
Disease AbbreviationNHL
CancerYes
Literature
PubMed ID32350851
JournalInternational journal of cancer
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq24.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start141557805
Hg19 End141557806
Hg38 Start141236668
Hg38 End141236669
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint12159
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1400430