Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10021462

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10021462
Fusion NameHBV-chr21:10618958 integration
ValidatedNo
Curated WayViMIC
MethodBioinformatics analysis
Wet AssayNo
Sample ID-
Sample Name087971T
Sample TypeTumor
Age45
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32797164
JournalBioscience reports
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandp11.2
Human Strand
Human Integration Location Typeintergenic
Hg19 Start10893497
Hg19 End10893498
Hg38 Start10618958
Hg38 End10618959
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneSLC25A15P4
Distance5580
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1400758