Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10022721

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10022721
Fusion NameHBV-DUS2 integration
ValidatedNo
Curated WayViMIC
MethodBioinformatics analysis
Wet AssayNo
Sample ID-
Sample Name085853T
Sample TypeTumor
Age52
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32797164
JournalBioscience reports
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr16
Cytogenetic Bandq22.1
Human Strand
Human Integration Location Typeexonic
Hg19 Start68050100
Hg19 End68050101
Hg38 Start68016197
Hg38 End68016198
Junction Sequence-
Target Gene
Target GeneDUS2
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1402027