Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10023072

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10023072
Fusion NameHBV-KMT2B integration
ValidatedNo
Curated WayViMIC
MethodBioinformatics analysis
Wet AssayNo
Sample ID-
Sample Name084519T
Sample TypeTumor
Age56
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32797164
JournalBioscience reports
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.12
Human Strand
Human Integration Location Typeexonic
Hg19 Start36213549
Hg19 End36213550
Hg38 Start35722647
Hg38 End35722648
Junction Sequence-
Target Gene
Target GeneKMT2B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1402378