Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10023126

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10023126
Fusion NameHBV-LINC02008 integration
ValidatedNo
Curated WayViMIC
MethodBioinformatics analysis
Wet AssayNo
Sample ID-
Sample Name084338T
Sample TypeTumor
Age42
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32797164
JournalBioscience reports
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandp12.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start82090972
Hg19 End82090973
Hg38 Start82041821
Hg38 End82041822
Junction Sequence-
Target Gene
Target GeneLINC02008
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1402432