Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10023641

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10023641
Fusion NameHBV-SLC25A21 integration
ValidatedNo
Curated WayViMIC
MethodBioinformatics analysis
Wet AssayNo
Sample ID-
Sample Name085956T
Sample TypeTumor
Age38
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32797164
JournalBioscience reports
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq13.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start37603853
Hg19 End37603854
Hg38 Start37134648
Hg38 End37134649
Junction Sequence-
Target Gene
Target GeneSLC25A21
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1402949