Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10023746

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10023746
Fusion NameHBV-LINGO1 integration
ValidatedNo
Curated WayViMIC
MethodBioinformatics analysis
Wet AssayNo
Sample ID-
Sample Name085580T
Sample TypeTumor
Age56
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32797164
JournalBioscience reports
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq24.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start77910867
Hg19 End77910868
Hg38 Start77618525
Hg38 End77618526
Junction Sequence-
Target Gene
Target GeneLINGO1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1403054