Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10023931

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10023931
Fusion NameHBV-PIK3C2G integration
ValidatedNo
Curated WayViMIC
MethodBioinformatics analysis
Wet AssayNo
Sample ID-
Sample Name084926T
Sample TypeTumor
Age47
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32797164
JournalBioscience reports
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp12.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start18731610
Hg19 End18731611
Hg38 Start18578676
Hg38 End18578677
Junction Sequence-
Target Gene
Target GenePIK3C2G
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1403243