Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024006

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024006
Fusion NameHBV-chr1:117684996 integration
ValidatedNo
Curated WayViMIC
MethodBioinformatics analysis
Wet AssayNo
Sample ID-
Sample Name084550T
Sample TypeTumor
Age27
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32797164
JournalBioscience reports
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp12
Human Strand
Human Integration Location Typeintergenic
Hg19 Start118227618
Hg19 End118227619
Hg38 Start117684996
Hg38 End117684997
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000212266
Distance3625
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAB014381.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus 22Y04HCC genomic DNA, complete sequence
Virus Genome Length3215 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1403319