Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024800

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024800
Fusion NameHBV-TMEM132D integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI001
Sample TypeTumor
Age51
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq24.33
Human Strand
Human Integration Location Typeintronic
Hg19 Start129949962
Hg19 End129949963
Hg38 Start129465417
Hg38 End129465418
Junction Sequence-
Target Gene
Target GeneTMEM132D
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11834
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404116