Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024819

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024819
Fusion NameHBV-C12orf76 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI002
Sample TypeTumor
Age64
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq24.11
Human Strand
Human Integration Location Typeintronic
Hg19 Start110478839
Hg19 End110478881
Hg38 Start110041034
Hg38 End110041076
Junction Sequence-
Target Gene
Target GeneC12orf76
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint12006
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404136