Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024844

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024844
Fusion NameHBV-ZDHHC11 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI004
Sample TypeAdjacent Liver and tumor
Age47
GenderMale
Disease Information
Disease NameBile duct carcinoma
Disease AbbreviationBDC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandp15.33
Human Strand
Human Integration Location Typeintronic
Hg19 Start803871
Hg19 End803872
Hg38 Start803756
Hg38 End803757
Junction Sequence-
Target Gene
Target GeneZDHHC11
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11405
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404161