Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024913

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024913
Fusion NameHBV-ENSG00000285572 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI010
Sample TypeAdjacent Liver
Age36
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq22.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start77226176
Hg19 End77226177
Hg38 Start76652041
Hg38 End76652042
Junction Sequence-
Target Gene
Target GeneENSG00000285572
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11822
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404231