Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024921

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024921
Fusion NameHBV-PYGL integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI010
Sample TypeAdjacent Liver
Age36
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq22.1
Human Strand
Human Integration Location Typeintronic
Hg19 Start51384086
Hg19 End51384087
Hg38 Start50917368
Hg38 End50917369
Junction Sequence-
Target Gene
Target GenePYGL
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint12073
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404239