Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024964

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024964
Fusion NameHBV-ENSG00000259106 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI010
Sample TypeTumor
Age36
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq31.1
Human Strand
Human Integration Location Typeintronic
Hg19 Start80088290
Hg19 End80088301
Hg38 Start79621947
Hg38 End79621958
Junction Sequence-
Target Gene
Target GeneENSG00000259106, NRXN3
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11655
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404282