Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024968

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024968
Fusion NameHBV-EXOC6B integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI010
Sample TypeTumor
Age36
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandp13.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start72697717
Hg19 End72697720
Hg38 Start72470588
Hg38 End72470591
Junction Sequence-
Target Gene
Target GeneEXOC6B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint13052
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404286