Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024973

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024973
Fusion NameHBV-ANKRD33B integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI010
Sample TypeTumor
Age36
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandp15.2
Human Strand
Human Integration Location Typeintronic
Hg19 Start10596026
Hg19 End10596078
Hg38 Start10595914
Hg38 End10595966
Junction Sequence-
Target Gene
Target GeneANKRD33B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11480
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404291