Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024975

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024975
Fusion NameHBV-FN1 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI010
Sample TypeTumor
Age36
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq35
Human Strand
Human Integration Location Typeintronic
Hg19 Start216294674
Hg19 End216294675
Hg38 Start215429951
Hg38 End215429952
Junction Sequence-
Target Gene
Target GeneFN1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11292
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404293