Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024982

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024982
Fusion NameHBV-FNDC3B integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI011
Sample TypeAdjacent Liver and tumor
Age42
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq26.31
Human Strand
Human Integration Location Typeintronic
Hg19 Start171882720
Hg19 End171882721
Hg38 Start172164930
Hg38 End172164931
Junction Sequence-
Target Gene
Target GeneFNDC3B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameNA
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1NA
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404302