Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10024992

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10024992
Fusion NameHBV-ADH4 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample Name-
Sample TypeAdjacent Liver
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq23
Human Strand
Human Integration Location Typeintronic
Hg19 Start100055861
Hg19 End100055865
Hg38 Start99134710
Hg38 End99134714
Junction Sequence-
Target Gene
Target GeneADH4, ENSG00000246090
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404312