Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025015

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025015
Fusion NameHBV-INO80D-AS1 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI013
Sample TypeAdjacent Liver
Age63
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq33.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start206952202
Hg19 End206952203
Hg38 Start206087478
Hg38 End206087479
Junction Sequence-
Target Gene
Target GeneINO80D-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11129
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404335