Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025025

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025025
Fusion NameHBV-CAMK2D integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI013
Sample TypeAdjacent Liver
Age63
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq26
Human Strand
Human Integration Location Typeintronic
Hg19 Start114631639
Hg19 End114631640
Hg38 Start113710483
Hg38 End113710484
Junction Sequence-
Target Gene
Target GeneCAMK2D
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameNA
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1NA
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404345