Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025039

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025039
Fusion NameHBV-ENSG00000289475 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI013
Sample TypeAdjacent Liver
Age63
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq21.1
Human Strand
Human Integration Location Typeintronic
Hg19 Start57677243
Hg19 End57677245
Hg38 Start57103109
Hg38 End57103111
Junction Sequence-
Target Gene
Target GeneENSG00000289475
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint12700
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404359