Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025051

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025051
Fusion NameHBV-MIA2 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI013
Sample TypeAdjacent Liver
Age63
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq21.1
Human Strand
Human Integration Location Typeintronic
Hg19 Start39800853
Hg19 End39800864
Hg38 Start39331649
Hg38 End39331660
Junction Sequence-
Target Gene
Target GeneMIA2
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11806
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404371