Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025069

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025069
Fusion NameHBV-KMT2B integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI013
Sample TypeTumor
Age63
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr19
Cytogenetic Bandq13.12
Human Strand
Human Integration Location Typeexonic
Hg19 Start36212625
Hg19 End36212626
Hg38 Start35721723
Hg38 End35721724
Junction Sequence-
Target Gene
Target GeneKMT2B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11576
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404389