Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025167

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025167
Fusion NameHBV-chr13:88416064 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI015
Sample TypeTumor
Age60
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq31.2
Human Strand
Human Integration Location Typeintergenic
Hg19 Start89068319
Hg19 End89068320
Hg38 Start88416064
Hg38 End88416065
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1997
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404489