Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025171

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025171
Fusion NameHBV-EYA1 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI015
Sample TypeTumor
Age60
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandq13.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start72460571
Hg19 End72460574
Hg38 Start71548336
Hg38 End71548339
Junction Sequence-
Target Gene
Target GeneEYA1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1188
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404493