Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025179

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025179
Fusion NameHBV-TIMM23B-AGAP6 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI016
Sample TypeAdjacent Liver
Age62
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr10
Cytogenetic Bandq11.23
Human Strand
Human Integration Location Typeexonic
Hg19 Start51749039
Hg19 End51749069
Hg38 Start49989279
Hg38 End49989309
Junction Sequence-
Target Gene
Target GeneTIMM23B-AGAP6, AGAP6
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11754
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404501