Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025185

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025185
Fusion NameHBV-CPB2 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample NameI016
Sample TypeTumor
Age62
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq14.13
Human Strand
Human Integration Location Typeintronic
Hg19 Start46654236
Hg19 End46654237
Hg38 Start46080101
Hg38 End46080102
Junction Sequence-
Target Gene
Target GeneCPB2, CPB2-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameNA
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1NA
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404507