Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025234

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025234
Fusion NameHBV-ENSG00000286063 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample Names002
Sample TypeSaliva and paired cfDNA
Age62
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr20
Cytogenetic Bandq13.13
Human Strand
Human Integration Location Typeintronic
Hg19 Start46958794
Hg19 End46958795
Hg38 Start48330051
Hg38 End48330052
Junction Sequence-
Target Gene
Target GeneENSG00000286063
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11740
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404556