Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025299

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025299
Fusion NameHBV-chr4:156544539 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample Namec005
Sample Type Tumor and paired cfDNA samples
Age-
GenderMale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq32.1
Human Strand
Human Integration Location Typeintergenic
Hg19 Start157465691
Hg19 End157465720
Hg38 Start156544539
Hg38 End156544568
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint13027
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404621