Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025364

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025364
Fusion NameHBV-TYW1B integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample Namec008
Sample Type Tumor and paired cfDNA samples
Age59
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandq11.22
Human Strand
Human Integration Location Typeintronic
Hg19 Start72134663
Hg19 End72134743
Hg38 Start72669676
Hg38 End72669756
Junction Sequence-
Target Gene
Target GeneTYW1B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name+
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11541
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404686