Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10025372

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10025372
Fusion NameHBV-TIAM1 integration
ValidatedNo
Curated WayViMIC
MethodTargeted Sequencing
Wet AssayYes
Sample ID-
Sample Namec008
Sample Type Tumor and paired cfDNA samples
Age59
GenderFemale
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID32100258
JournalHepatology International
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq22.11
Human Strand
Human Integration Location Typeexonic
Hg19 Start32525242
Hg19 End32525443
Hg38 Start31152924
Hg38 End31153125
Junction Sequence-
Target Gene
Target GeneTIAM1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length-
Virus Breakpoint11327
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID1404694